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1

Synthesis and Application of Functional Nucleic Acids

Miyoshi, Daisuke, Simmel, Friedrich C., Maiti, Souvik, Marky, Luis A.

Journal:

Journal of Nucleic Acids

Year:

2011

Language:

english

File:

PDF, 1.02 MB

english, 2011

2

Folding of Intramolecular DNA Hairpin Loops: Enthalpy−Entropy Compensations and Hydration Contributions

Rentzeperis, Dionisios, Shikiya, Ronald, Maiti, Souvik, Ho, James, Marky, Luis A.

Journal:

Journal of Physical Chemistry B

Year:

2002

Language:

english

File:

PDF, 100 KB

english, 2002

3

Predicting DNA Duplex Stability from the Base Sequence

Kenneth J. Breslauer, Ronald Frank, Helmut Blöcker and Luis A. Marky

Journal:

Proceedings of the National Academy of Sciences

Year:

1986

Language:

english

File:

PDF, 879 KB

english, 1986

4

Thermodynamic investigation of kissing-loop interactions

Carr, Carolyn E., Marky, Luis A.

Journal:

Year:

2019

Language:

english

File:

PDF, 830 KB

english, 2019

5

Novel biomineral-binding cyclodextrins for controlled drug delivery in the oral cavity

Xin-Ming Liu, Hui-Ting Lee, Richard A. Reinhardt, Luis A. Marky, Dong Wang

Journal:

Journal of Controlled Release

Year:

2007

Language:

english

File:

PDF, 621 KB

english, 2007

6

Unfolding Thermodynamics of Intramolecular G-Quadruplexes: Base Sequence Contributions of the Loops †

Olsen, Chris M., Lee, Hui-Ting, Marky, Luis A.

Journal:

Journal of Physical Chemistry B

Year:

2009

Language:

english

File:

PDF, 320 KB

english, 2009

7

Thermodynamic contributions of the reactions of DNA intramolecular structures with their complementary strands

Hui-Ting Lee, Chris M. Olsen, Lela Waters, Holly Sukup, Luis A. Marky

Journal:

Year:

2008

Language:

english

File:

PDF, 600 KB

english, 2008

8

Molecular Recognition via Triplex Formation of Mixed Purine/Pyrimidine DNA Sequences Using OligoTRIPs

Li, Jian-Sen, Chen, Fa-Xian, Shikiya, Ronald, Marky, Luis A., Gold, Barry

Journal:

Journal of the American Chemical Society

Year:

2005

Language:

english

File:

PDF, 239 KB

english, 2005

9

DNA Intramolecular Triplexes Containing dT → dU Substitutions: Unfolding Energetics and Ligand Binding †

Soto, Ana Maria, Rentzeperis, Dionisios, Shikiya, Ronald, Alonso, Michelle, Marky, Luis A.

Journal:

Year:

2006

Language:

english

File:

PDF, 127 KB

english, 2006

10

The Volume Property: Hydration in Biosystems

Kupke, Donald W., Marky, Luis A.

Journal:

Journal of Biomedical Nanotechnology

Year:

2005

Language:

english

File:

PDF, 190 KB

english, 2005

11

Targeted vascular delivery of antisense molecules using intravenous microbubbles

Thomas R. Porter, Feng Xie, Derek Knapp, Patrick Iversen, Luis A. Marky, Jeane M. Tsutsui, Souvik Maiti, John Lof, Stanley J. Radio, Nicholas Kipshidze

Journal:

Cardiovascular Revascularization Medicine

Year:

2006

Language:

english

File:

PDF, 990 KB

english, 2006

12

[Methods in Enzymology] Drug-Nucleic Acid Interactions Volume 340 || Volume changes accompanying interaction of ligands with nucleic acids

Year:

2001

Language:

english

File:

PDF, 917 KB

english, 2001

13

Enthalpy--Entropy Compensations in Drug-DNA Binding Studies

Kenneth J. Breslauer, David P. Remeta, Wan-Yin Chou, Robert Ferrante, James Curry, Denise Zaunczkowski, James G. Snyder and Luis A. Marky

Journal:

Proceedings of the National Academy of Sciences

Year:

1987

Language:

english

File:

PDF, 1.02 MB

english, 1987

14

Thermodynamics of dT−dT Base Pair Mismatching in Linear DNA Duplexes and Three-Arm DNA Junctions †

Zhong, Min, Marky, Luis A., Kallenbach, Neville R., Kupke, Donald W.

Journal:

Year:

1997

Language:

english

File:

PDF, 138 KB

english, 1997

15

Unfolding Thermodynamics of DNA Pyrimidine Triplexes with Different Molecularities

Lee, Hui-Ting, Arciniegas, Santiago, Marky, Luis A.

Journal:

Journal of Physical Chemistry B

Year:

2008

Language:

english

File:

PDF, 125 KB

english, 2008

16

A Thermodynamic Characterization of the Interaction of a Cationic Copolymer with DNA

Bronich, Tatiana, Kabanov, Alexander V., Marky, Luis A.

Journal:

Journal of Physical Chemistry B

Year:

2001

Language:

english

File:

PDF, 207 KB

english, 2001

17

Thermodynamic Stability of DNA Duplexes Comprising the Simplest T → dU Substitutions

Carr, Carolyn E, Khutsishvili, Irine, Gold, Barry, Marky, Luis A.

Journal:

Year:

2018

Language:

english

File:

PDF, 513 KB

english, 2018

18

Unfolding and Targeting Thermodynamics of DNA Stem-Loop Motifs

Khutshivilli, Irine, Prislan, Iztok, Lee, Hui-Ting, Lee, Cynthia, Marky, Luis A.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 37 KB

english, 2013

19

Helix-Coil Transitions of Unusual DNA Structures by Measuring the Fluorescence Changes of 2-Aminopurine When Incorporated into DNA

Lee, Hui-Ting, Waters, Lela, Olsen, Chris M., Khutsishvili, Irine, Marky, Luis A.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 39 KB

english, 2009

20

Introduction of Cationic Charge into DNA Near the Major Groove Edge of a Guanine•Cytosine Base Pair: Characterization of Oligodeoxynucleotides Substituted with 7-Aminomethyl-7-deaza-2′-deoxyguanosine

Ganguly, Manjori, Wang, Ruo-Wen, Marky, Luis A., Gold, Barry

Journal:

Journal of the American Chemical Society

Year:

2009

Language:

english

File:

PDF, 165 KB

english, 2009

21

T-T base mismatches enhance drug binding at the branch site in a four-arm DNA junction

Zhong, Min, Rashes, Michael S., Marky, Luis A., Kallenbach, Neville R.

Journal:

Year:

1992

Language:

english

File:

PDF, 1.73 MB

english, 1992

22

Structure and energetics of a hexanucleotide duplex with stacked trinucleotide ends formed by the sequence d(GAATTCGCG)

Patel, Dinshaw J., Kozlowski, Sharon A., Marky, Luis A., Rice, Janet A., Broka, Chris, Itakura, Keiichi, Breslauer, Kenneth J.

Journal:

Year:

1982

Language:

english

File:

PDF, 583 KB

english, 1982

23

Application of differential scanning calorimetry to measure the differential binding of ions, water and protons in the unfolding of DNA molecules

Olsen, Chris M., Shikiya, Ronald, Ganugula, Rajkumar, Reiling-Steffensmeier, Calliste, Khutsishvili, Irine, Johnson, Sarah E., Marky, Luis A.

Journal:

Biochimica et Biophysica Acta (BBA) - General Subjects

Year:

2016

Language:

english

File:

PDF, 777 KB

english, 2016

24

Binding of Actinomycin D to Single-Stranded Dna

Jares-Erijman, Elizabeth A., Klement, Reinhard, Machinek, Reinhard, Wadkins, Randy M., Kankia, Besik I., Marky, Luis A., Jovin, Thomas M.

Journal:

Nucleosides and Nucleotides

Year:

1997

Language:

english

File:

PDF, 521 KB

english, 1997

25

DNA oligonucleotide duplexes containing intramolecular platinated cross-links: Energetics, hydration, sequence, and ionic effects

Besik I. Kankia, Ana Maria Soto, Nicole Burns, Ronald Shikiya, Chang-Shung Tung, Luis A. Marky

Journal:

Year:

2002

Language:

english

File:

PDF, 478 KB

english, 2002

26

DNA, RNA, and DNA/RNA Oligomer Duplexes: A Comparative Study of Their Stability, Heat, Hydration, and Mg 2+ Binding Properties

Kankia, Besik I., Marky, Luis A.

Journal:

Journal of Physical Chemistry B

Year:

1999

Language:

english

File:

PDF, 149 KB

english, 1999

27

Hydration Effects Accompanying the Substitution of Counterions in the Ionic Atmosphere of Poly(rA)·Poly(rU) and Poly(rA)·2Poly(rU) Helices

Buckin, Vitaly, Tran, Huy, Morozov, Victor, Marky, Luis A.

Journal:

Journal of the American Chemical Society

Year:

1996

Language:

english

File:

PDF, 261 KB

english, 1996

28

DNA Complexes Containing Joined Triplex and Duplex Motifs: Melting Behavior of Intramolecular and Bimolecular Complexes with Similar Sequences

Lee, Hui-Ting, Khutsishvili, Irine, Marky, Luis A.

Journal:

Journal of Physical Chemistry B

Year:

2010

Language:

english

File:

PDF, 533 KB

english, 2010

29

A Review of the Role of the Sequence-Dependent Electrostatic Landscape in DNA Alkylation Patterns

Gold, Barry, Marky, Luis M., Stone, Michael P., Williams, Loren D.

Journal:

Chemical Research in Toxicology

Year:

2006

Language:

english

File:

PDF, 613 KB

english, 2006

30

Equilibrium Analysis of Ethidium Binding to DNA Containing Base Mismatches and Branches

Hernandez, Luis I., Zhong, Min, Courtney, Scott H., Marky, Luis A., Kallenbach, Neville R.

Journal:

Year:

1994

Language:

english

File:

PDF, 731 KB

english, 1994

31

The Inclusion of a GCAA Tetraloop Affects the Unfolding Thermodynamics of Intramolecular DNA Structures

Khutsishvili, Irine, Carr, Carolyn E., Marky, Luis A.

Journal:

Biophysical Journal

Year:

2020

File:

PDF, 47 KB

2020

32

Editorial: Thermodynamics and structure of nucleic acids with modified bases

Journal:

Year:

2002

Language:

english

File:

PDF, 26 KB

english, 2002

33

VACUUM ULTRAVIOLET CIRCULAR DICHROISM OF DOUBLE STRANDED NUCLEIC ACIDS

John C. Sutherland, Bohai Lin, Jo Ann Mugavero, John Trunk, Maria Tomasz, Regina Santella, Luis Marky, Kenneth J. Breslauer

Journal:

Photochemistry and Photobiology

Year:

1986

Language:

english

File:

PDF, 625 KB

english, 1986

34

Hydration of dA.cntdot.dT polymers: role of water in the thermodynamics of ethidium and propidium intercalation

Marky, Luis A., Macgregor, Robert B.

Journal:

Year:

1990

Language:

english

File:

PDF, 850 KB

english, 1990

35

Calorimetric unfolding of the bimolecular and i-motif complexes of the human telomere complementary strand, d(C3TA2)4

Mahima Kaushik, Nathan Suehl, Luis A. Marky

Journal:

Biophysical Chemistry

Year:

2007

Language:

english

File:

PDF, 564 KB

english, 2007

36

Core cross-linked block ionomer micelles as pH-responsive carriers for cis-diamminedichloroplatinum(II)

Hardeep S. Oberoi, Frederic C. Laquer, Luis A. Marky, Alexander V. Kabanov, Tatiana K. Bronich

Journal:

Journal of Controlled Release

Year:

2011

Language:

english

File:

PDF, 540 KB

english, 2011

37

The Effect of Site-Specific Modifications of DNA on Thermodynamic Stability, Ion Binding and Hydration

Ganguly, Manjori, Wang, Ruowen, Wang, Feng, Stone, Michael P., Marky, Luis A., Gold, Barry I.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 55 KB

english, 2010

38

The role of ion pairs in .alpha. helix stability: two new designed helical peptides

Lyu, Ping Chiang, Marky, Luis A., Kallenbach, Neville R.

Journal:

Journal of the American Chemical Society

Year:

1989

Language:

english

File:

PDF, 291 KB

english, 1989

39

Structure of B-DNA with Cations Tethered in the Major Groove †,‡

Moulaei, Tinoush, Maehigashi, Tatsuya, Lountos, George T., Komeda, Seiji, Watkins, Derrick, Stone, Michael P., Marky, Luis A., Li, Jian-sen, Gold, Barry, Williams, Loren Dean

Journal:

Year:

2005

Language:

english

File:

PDF, 1.67 MB

english, 2005

40

Interaction of the dye ethidium bromide with DNA containing guanine repeats

Guo, Qiu, Lu, Min, Marky, Luis A., Kallenbach, Neville R.

Journal:

Year:

1992

Language:

english

File:

PDF, 1.04 MB

english, 1992

41

Increased Flexibility between Stems of Intramolecular Three-Way Junctions by the Insertion of Bulges

Carr, Carolyn E., Marky, Luis A.

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 929 KB

english, 2018

42

Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves

Luis A. Marky, Kenneth J. Breslauer

Journal:

Year:

1987

Language:

english

File:

PDF, 1.10 MB

english, 1987

43

Functional Study of the P32T ITPA Variant Associated with Drug Sensitivity in Humans

Elena I. Stepchenkova, Elena R. Tarakhovskaya, Kathryn Spitler, Christin Frahm, Miriam R. Menezes, Peter D. Simone, Carol Kolar, Luis A. Marky, Gloria E.O. Borgstahl, Youri I. Pavlov

Journal:

Journal of Molecular Biology

Year:

2009

Language:

english

File:

PDF, 600 KB

english, 2009

44

Melting Behavior of DNA Complexes With Joined Triple and Duplex Motifs

Khutsishvili, Irine, Johnson, Sarah, Lee, Hui-Ting, Marky, Luis A.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 44 KB

english, 2010

45

Effect of tetramethylammonium ion on the helix-to-coil transition of poly(deoxyadenylylthymidine): a nuclear magnetic resonance and calorimetric investigation

Marky, Luis A., Patel, Dinshaw, Breslauer, Kenneth J.

Journal:

Year:

1981

Language:

english

File:

PDF, 599 KB

english, 1981

46

Solvent effects on the kinetics and thermodynamics of stacking in poly(cytidylic acid)

Freier, Susan M., Hill, K. O., Dewey, T. G., Marky, Luis A., Breslauer, Kenneth J., Turner, Douglas H.

Journal:

Year:

1981

Language:

english

File:

PDF, 1.57 MB

english, 1981

47

Differential Binding of Ions and Water in the Unfolding of DNA Hairpins

Shikiya, Ronald, Khutsishvili, Irine, Marky, Luis A.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 41 KB

english, 2012

48

A Bridging Water Anchors the Tethered 5-(3-Aminopropyl)-2′-deoxyuridine Amine in the DNA Major Groove Proximate to the N+2 C·G Base Pair: Implications for Formation of Interstrand 5′-GNC-3′ Cross-Links by Nitrogen Mustards †,‡

Wang, Feng, Li, Feng, Ganguly, Manjori, Marky, Luis A., Gold, Barry, Egli, Martin, Stone, Michael P.

Journal:

Year:

2008

Language:

english

File:

PDF, 4.46 MB

english, 2008

49

The melting behavior of a DNA junction structure: A calorimetric and spectroscopic study

Luis A. Marky, Neville R. Kallenbach, Kathleen A. McDonough, Nadrian C. Seeman, Kenneth J. Breslauer

Journal:

Year:

1987

Language:

english

File:

PDF, 728 KB

english, 1987

50

Hydrolysis ofcis- andtrans-Diammineplatinum(II) Complexes: Hydration, Equilibrium, and Kinetics Properties

Besik I. Kankia, Theodor Funck, Luis A. Marky

Journal:

Journal of Solution Chemistry

Year:

1999

Language:

english

File:

PDF, 665 KB

english, 1999

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